Detection of low pathogenic avian influenza viruses in wild birds in Castilla-La Mancha (south central Spain).
Identifieur interne : 000488 ( Main/Exploration ); précédent : 000487; suivant : 000489Detection of low pathogenic avian influenza viruses in wild birds in Castilla-La Mancha (south central Spain).
Auteurs : Elisa Pérez-Ramírez [Espagne] ; Xeider Gerrikagoitia ; Marta Barral ; Ursula HöfleSource :
- Veterinary microbiology [ 1873-2542 ] ; 2010.
Descripteurs français
- KwdFr :
- Animaux (MeSH), Animaux sauvages (virologie), Cloaque (virologie), Données de séquences moléculaires (MeSH), Espagne (MeSH), Fèces (virologie), Grippe chez les oiseaux (virologie), Humidité (MeSH), Oiseaux (virologie), Saisons (MeSH), Sous-type H5N1 du virus de la grippe A (génétique), Sous-type H5N1 du virus de la grippe A (isolement et purification), Sous-type H5N1 du virus de la grippe A (physiologie), Température (MeSH).
- MESH :
- génétique : Sous-type H5N1 du virus de la grippe A.
- isolement et purification : Sous-type H5N1 du virus de la grippe A.
- physiologie : Sous-type H5N1 du virus de la grippe A.
- virologie : Animaux sauvages, Cloaque, Fèces, Grippe chez les oiseaux, Oiseaux.
- Animaux, Données de séquences moléculaires, Espagne, Humidité, Saisons, Température.
English descriptors
- KwdEn :
- Animals (MeSH), Animals, Wild (virology), Birds (virology), Cloaca (virology), Feces (virology), Humidity (MeSH), Influenza A Virus, H5N1 Subtype (genetics), Influenza A Virus, H5N1 Subtype (isolation & purification), Influenza A Virus, H5N1 Subtype (physiology), Influenza in Birds (virology), Molecular Sequence Data (MeSH), Seasons (MeSH), Spain (MeSH), Temperature (MeSH).
- MESH :
- genetics : Influenza A Virus, H5N1 Subtype.
- isolation & purification : Influenza A Virus, H5N1 Subtype.
- physiology : Influenza A Virus, H5N1 Subtype.
- virology : Animals, Wild, Birds, Cloaca, Feces, Influenza in Birds.
- Animals, Humidity, Molecular Sequence Data, Seasons, Spain, Temperature.
Abstract
The Iberian Peninsula is located along the East Atlantic and Black Sea/Mediterranean flyways and is the third ranking European country as wintering quarter for wild migrating birds after Turkey and Rumania. For these reasons, Spanish wetlands are of importance in AIV surveillance, and of great interest for the study of the epidemiology of LPAIV under Mediterranean climate conditions. Nevertheless, information on prevalence of LPAIV viruses in Spain is still scarce and is restricted to two serological surveys carried out in the south of the country during 1990 and 1994 and one virological study performed recently in North East Spain. In the present study we analysed the prevalence of AIV circulating in wild birds in continental wetlands in central Spain and determined temporal, spatial and species variation. Real time RTPCR was performed on 1435 faecal samples and cloacal swabs from 54 species. An overall AIV prevalence of 2.6% was detected with a peak during November and December, when thousands of migrating wild birds arrive to Spain for wintering. Highest prevalence rates were detected in Phoenicopteriformes and Anseriformes. AIV prevalence obtained from cloacal swabs and fresh faeces did not vary significantly, which supports faecal sampling as an appropriate method for large scale LPAIV surveillance programs. Viral culture was achieved in samples obtained from two Mallards and a White stork, in which subtypes H7N9 and H11N9, respectively, were identified. Our results reflect a similar scenario in AIV epidemiology in small continental wetlands as compared to large coastal humid areas in Europe and underline the importance of including species such as flamingos and storks in surveillance programs, since their role in AIV ecology in these areas could be more important than previously considered.
DOI: 10.1016/j.vetmic.2010.05.008
PubMed: 20605691
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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sortKey="Barral, Marta" sort="Barral, Marta" uniqKey="Barral M" first="Marta" last="Barral">Marta Barral</name></author><author><name sortKey="Hofle, Ursula" sort="Hofle, Ursula" uniqKey="Hofle U" first="Ursula" last="Höfle">Ursula Höfle</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2010">2010</date><idno type="RBID">pubmed:20605691</idno><idno type="pmid">20605691</idno><idno type="doi">10.1016/j.vetmic.2010.05.008</idno><idno type="wicri:Area/Main/Corpus">00457</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">00457</idno><idno type="wicri:Area/Main/Curation">000457</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000457</idno><idno type="wicri:Area/Main/Exploration">000457</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Detection of low pathogenic avian influenza viruses in wild birds in Castilla-La Mancha (south central Spain).</title><author><name sortKey="Perez Ramirez, Elisa" sort="Perez Ramirez, Elisa" uniqKey="Perez Ramirez E" first="Elisa" last="Pérez-Ramírez">Elisa Pérez-Ramírez</name><affiliation wicri:level="1"><nlm:affiliation>Instituto de Investigación en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Ronda de Toledo s/n 13005, Ciudad Real, Spain. elisa.perez@uclm.es</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Instituto de Investigación en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Ronda de Toledo s/n 13005, Ciudad Real</wicri:regionArea><wicri:noRegion>Ciudad Real</wicri:noRegion></affiliation></author><author><name sortKey="Gerrikagoitia, Xeider" sort="Gerrikagoitia, Xeider" uniqKey="Gerrikagoitia X" first="Xeider" last="Gerrikagoitia">Xeider Gerrikagoitia</name></author><author><name sortKey="Barral, Marta" sort="Barral, Marta" uniqKey="Barral M" first="Marta" last="Barral">Marta Barral</name></author><author><name sortKey="Hofle, Ursula" sort="Hofle, Ursula" uniqKey="Hofle U" first="Ursula" last="Höfle">Ursula Höfle</name></author></analytic><series><title level="j">Veterinary microbiology</title><idno type="eISSN">1873-2542</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Animals, Wild (virology)</term><term>Birds (virology)</term><term>Cloaca (virology)</term><term>Feces (virology)</term><term>Humidity (MeSH)</term><term>Influenza A Virus, H5N1 Subtype (genetics)</term><term>Influenza A Virus, H5N1 Subtype (isolation & purification)</term><term>Influenza A Virus, H5N1 Subtype (physiology)</term><term>Influenza in Birds (virology)</term><term>Molecular Sequence Data (MeSH)</term><term>Seasons (MeSH)</term><term>Spain (MeSH)</term><term>Temperature (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux (MeSH)</term><term>Animaux sauvages (virologie)</term><term>Cloaque (virologie)</term><term>Données de séquences moléculaires (MeSH)</term><term>Espagne (MeSH)</term><term>Fèces (virologie)</term><term>Grippe chez les oiseaux (virologie)</term><term>Humidité (MeSH)</term><term>Oiseaux (virologie)</term><term>Saisons (MeSH)</term><term>Sous-type H5N1 du virus de la grippe A (génétique)</term><term>Sous-type H5N1 du virus de la grippe A (isolement et purification)</term><term>Sous-type H5N1 du virus de la grippe A (physiologie)</term><term>Température (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Sous-type H5N1 du virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Sous-type H5N1 du virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Sous-type H5N1 du virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Animaux sauvages</term><term>Cloaque</term><term>Fèces</term><term>Grippe chez les oiseaux</term><term>Oiseaux</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Animals, Wild</term><term>Birds</term><term>Cloaca</term><term>Feces</term><term>Influenza in Birds</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Humidity</term><term>Molecular Sequence Data</term><term>Seasons</term><term>Spain</term><term>Temperature</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Données de séquences 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For these reasons, Spanish wetlands are of importance in AIV surveillance, and of great interest for the study of the epidemiology of LPAIV under Mediterranean climate conditions. Nevertheless, information on prevalence of LPAIV viruses in Spain is still scarce and is restricted to two serological surveys carried out in the south of the country during 1990 and 1994 and one virological study performed recently in North East Spain. In the present study we analysed the prevalence of AIV circulating in wild birds in continental wetlands in central Spain and determined temporal, spatial and species variation. Real time RTPCR was performed on 1435 faecal samples and cloacal swabs from 54 species. An overall AIV prevalence of 2.6% was detected with a peak during November and December, when thousands of migrating wild birds arrive to Spain for wintering. Highest prevalence rates were detected in Phoenicopteriformes and Anseriformes. AIV prevalence obtained from cloacal swabs and fresh faeces did not vary significantly, which supports faecal sampling as an appropriate method for large scale LPAIV surveillance programs. Viral culture was achieved in samples obtained from two Mallards and a White stork, in which subtypes H7N9 and H11N9, respectively, were identified. Our results reflect a similar scenario in AIV epidemiology in small continental wetlands as compared to large coastal humid areas in Europe and underline the importance of including species such as flamingos and storks in surveillance programs, since their role in AIV ecology in these areas could be more important than previously considered.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">20605691</PMID><DateCompleted><Year>2011</Year><Month>05</Month><Day>04</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>01</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-2542</ISSN><JournalIssue CitedMedium="Internet"><Volume>146</Volume><Issue>3-4</Issue><PubDate><Year>2010</Year><Month>Dec</Month><Day>15</Day></PubDate></JournalIssue><Title>Veterinary microbiology</Title><ISOAbbreviation>Vet. Microbiol.</ISOAbbreviation></Journal><ArticleTitle>Detection of low pathogenic avian influenza viruses in wild birds in Castilla-La Mancha (south central Spain).</ArticleTitle><Pagination><MedlinePgn>200-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.vetmic.2010.05.008</ELocationID><Abstract><AbstractText>The Iberian Peninsula is located along the East Atlantic and Black Sea/Mediterranean flyways and is the third ranking European country as wintering quarter for wild migrating birds after Turkey and Rumania. For these reasons, Spanish wetlands are of importance in AIV surveillance, and of great interest for the study of the epidemiology of LPAIV under Mediterranean climate conditions. Nevertheless, information on prevalence of LPAIV viruses in Spain is still scarce and is restricted to two serological surveys carried out in the south of the country during 1990 and 1994 and one virological study performed recently in North East Spain. In the present study we analysed the prevalence of AIV circulating in wild birds in continental wetlands in central Spain and determined temporal, spatial and species variation. Real time RTPCR was performed on 1435 faecal samples and cloacal swabs from 54 species. An overall AIV prevalence of 2.6% was detected with a peak during November and December, when thousands of migrating wild birds arrive to Spain for wintering. Highest prevalence rates were detected in Phoenicopteriformes and Anseriformes. AIV prevalence obtained from cloacal swabs and fresh faeces did not vary significantly, which supports faecal sampling as an appropriate method for large scale LPAIV surveillance programs. Viral culture was achieved in samples obtained from two Mallards and a White stork, in which subtypes H7N9 and H11N9, respectively, were identified. Our results reflect a similar scenario in AIV epidemiology in small continental wetlands as compared to large coastal humid areas in Europe and underline the importance of including species such as flamingos and storks in surveillance programs, since their role in AIV ecology in these areas could be more important than previously considered.</AbstractText><CopyrightInformation>Copyright © 2010 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pérez-Ramírez</LastName><ForeName>Elisa</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Instituto de Investigación en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Ronda de Toledo s/n 13005, Ciudad Real, Spain. elisa.perez@uclm.es</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gerrikagoitia</LastName><ForeName>Xeider</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Barral</LastName><ForeName>Marta</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Höfle</LastName><ForeName>Ursula</ForeName><Initials>U</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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PubStatus="accepted"><Year>2010</Year><Month>05</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2010</Year><Month>7</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2010</Year><Month>7</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>5</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">20605691</ArticleId><ArticleId IdType="pii">S0378-1135(10)00235-X</ArticleId><ArticleId IdType="doi">10.1016/j.vetmic.2010.05.008</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Espagne</li></country></list><tree><noCountry><name sortKey="Barral, Marta" sort="Barral, Marta" uniqKey="Barral M" first="Marta" last="Barral">Marta Barral</name><name sortKey="Gerrikagoitia, Xeider" sort="Gerrikagoitia, Xeider" uniqKey="Gerrikagoitia X" first="Xeider" last="Gerrikagoitia">Xeider Gerrikagoitia</name><name sortKey="Hofle, Ursula" sort="Hofle, Ursula" uniqKey="Hofle U" first="Ursula" last="Höfle">Ursula Höfle</name></noCountry><country name="Espagne"><noRegion><name sortKey="Perez Ramirez, Elisa" sort="Perez Ramirez, Elisa" uniqKey="Perez Ramirez E" first="Elisa" last="Pérez-Ramírez">Elisa Pérez-Ramírez</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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